Name: Marta Dudek, MD, PhD

Nationality: Polish

Office address: Centre of New Technologies University of Warsaw, Banacha 2C, Warsaw

E-mail: mdudek@cent.uw.edu.pl

Phone: +48 22 5540824

Fax:+48 22 5040801

Education:

Specialization: Medicine

  • 2003 – 2006 Tadeusz Kościuszko’s High School No. 1 in Gorzów Wielkopolski

A-Levels in: Physics, Biology, Chemistry, English, Polish

  • 1997 – 2006 Tadeusz Szeligowski’s Music School in Gorzów Wielkopolski

Professional certificate of musician–instrumentalist (cellist)

 

Scholarships:

Publications:

1. Marta Dudek, Joanna Trylska. Molecular dynamics simulations of L-RNA involving homo- and heterochiral complexes. J. Chem. Theory Comput., 2017;13(3):1244–1253. doi: 10.1021/acs.jctc.6b01075

2. Marta Dudek, Julia Romanowska, Tomasz Wituła, Joanna Trylska. Interactions of amikacin with the RNA model of the ribosomal A-site: computational, spectroscopic and calorimetric studies, Biochimie 2014;102:188-202.

3. Monika Wojciechowska, Marta Dudek, Joanna Trylska. Thermodynamics of the pseudo-knot in helix 18 of 16S ribosomal RNA. Biopolymers 2018;109(4):e23116. doi: 10.1002/bip.23116.

4. Stanisław Niemczyk, Marta Dudek, Zbigniew Bartoszewicz, Katarzyna Szamotulska, Łukasz Woźniacki, Dorota Brodowska-Kania, Longin Niemczyk, Władysław Małek, Joanna Matuszkiewicz-Rowińska. Determining the enzymatic activities of iodothyronine 5'-deiodinases in renal medulla and cortex. Polish Journal of Endocrinology 2013; 64(3):182-5

 

Additional training, workshops:

  • 2018, Warsaw, Poland

Title: Supercomputing Frontiers Europe 2018. KDM Users Session (presentation and poster)

  • 2017, Uniejów, Poland

Title: Xth Symposium of the Polish Bioinformatics Society (poster)

  • 2017, Warsaw, Poland

Title: XXVIIth Congress of the Polish Society of Hematology and Transfusion Medicine (poster)

  • 2017, Lipari, Italy

Title: Lipari School on Computational Life Sciences (poster)

  • 2015, Lausanne, Switzerland

Title: Computational advances in drug discovery (poster)

  • 2015, Chicago, USA

Title: ASCO Annual Meeting

  • 2014, St. Simons Island, USA

Title: 14th Sanibel Symposium (presentation and poster)

  • 2013, Platja d´Aro, Spain

Title: CECAM/Psi-k Research Conference: Multi-scale Modeling from First-Principles (poster)

  • 2013, Brodnica, Poland

​Title:  IV Wielodyscyplinarne Spotkania Wakacyjne KFnrD "Rzeczpospolita mniej znana" (invited lecture)

  • 2013, Pułtusk, Poland

Title: Ogólnopolskie Sympozjum Interdyscyplinarne Inter-Mix 2013 (poster)

  • 2012, Gdańsk, Poland

Title: "10th Workshop on Bioinformatics and 5th Symposium of the Polish Bioinformatics Society" (oral presentation)

  • 2012, Paris, France

Title: "49th ERA-EDTA Congress" (poster)

  • 2011, Warsaw, Poland

Title: "Multi-Pole Approach to Structural Biology" (poster)

  • 2011, Warsaw, Poland

Title: "The Modern Techniques for Drug Design Purposes" (poster)

  • 2011, Bedlewo, Poland

Title: "Biomolecules and Nanostructures" (poster)

  • 2011, Zurich, Switzerland

Title: "Dynamics of Protein-Nucleic Acid Interactions: Integrating Simulations with Experiments" (poster)

  • 2011, Warsaw, Poland

Title: "7th Warsaw International Medical Congress for Young Scientists" (poster presentation)

  • 2009, San Sebastian, Spain

Title: "Summer School on Simulation Approaches to Problems in Molecular and

Cellular Biology" (poster contribution)

  • 2009, Cancer Center Institute, Warsaw

Title: "What do you know about cancer?" – conference on oncology

  • 2007, The University of Warsaw, Faculty of Biology, Division of Parasitology

Project: "Mechanism of apoptosis in Heligmosomoides polygyrus infection"

Supervisor: prof. Maria Doligalska

  • 2006, Division of Low Temperature Physics, Institute of Molecular Physics,

Polish Academy of Sciences, Odolanów

Title: "Summer with helium" – conference on advances in superconductivity

  • 2005, Molecular Biology Department, Cancer Center Institute, Warsaw

Project: "Investigating the interactions between regulatory proteins and non-coding

transcripts’ fragments"

Supervisor: prof. Janusz Siedlecki

  • 2005, Molecular Biology Department, Cancer Center Institute, Warsaw

Project: "Mutations in squamous cell carcinoma"

Supervisor: dr Ryszard Konopiński

  • 2005, Institute of Physics, Polish Academy of Sciences, Warsaw

Project: "Computational modelling of calmodulin and titin"

Supervisor: prof. Marek Cieplak

  • 2005, Institute of Organic Chemistry, Polish Academy of Sciences, Warsaw

Project: "Synthesis of dichlorosacharose"

Supervisor: prof. Sławomir Jarosz

  • 2005, Cademuir, Scotland

Title: "Cademuir Summer School"

 

Memberships:

American Society of Clinical Oncology - Junior Member

European Society for Medical Oncology - Member

World Doctors Orchestra - Cello

 

Activity in students' organizations:

Chairman of Students' Nephrological Scientific Circle - Military Institute of Medicine, Warsaw (2010-2012)

Chairman of Chamber Orchestra - Medical University, Warsaw (2007 - 2014)

2012, Rijeka, Croatia - participant of European Medical Students' Orchestra (cello)

 

Non-scientific skills:

Co-founder of Temptonik: the most advanced website for amateur and professional singers.

Engineer in K-Balans company.

Music: playing cello and church organs; establishing the first academic orchestra in Poland at the Medical University of Warsaw