Name: Marta Dudek, MD, PhD
Office address: Centre of New Technologies University of Warsaw, Banacha 2C, Warsaw
E-mail: mdudek@cent.uw.edu.pl
Phone: +48 22 5540824
Education:
- 2016 – PhD in molecular biology (biochemistry), Institute of Biochemistry and Biophysics PAS (thesis title: Exploring the interactions of aminoglycosides and synthetic oligonucleotides with RNA by computational and experimental methods)
- 2013 – 2019 Specialization: Clinical Oncology, Central Clinical Hospital, Department of Hematology, Oncology and Internal Diseases Medical University of Warsaw, Banacha 1a, Warsaw
- 2012 – 2013 Medical Internship, Central Clinical Hospital, Banacha 1a, Warsaw
- 2012 – 2016 PhD studies, Centre of New Technologies University of Warsaw & Medical University of Warsaw & Institute of Biochemistry and Biophysics, Polish Academy of Sciences
- 2006 – 2012 Studies at the Medical University of Warsaw
Specialization: Medicine
- 2003 – 2006 Tadeusz Kościuszko’s High School No. 1 in Gorzów Wielkopolski
A-Levels in: Physics, Biology, Chemistry, English, Polish
- 1997 – 2006 Tadeusz Szeligowski’s Music School in Gorzów Wielkopolski
Professional certificate of musician–instrumentalist (cellist)
Scholarships:
- Scholar of Polish Children’s Fund, 1999-2006
- Stipend in TEAM projects lead by Joanna Trylska, Biomolecular Machines Laboratory, Foundation for Polish Science, Interdisciplinary Centre for Mathematical and Computational Modelling, University of Warsaw, Zwirki i Wigury 93, 02-089 Warsaw, Poland, 2010-2013
- Special distinction in “Dziewczyny Przyszłości – Śladami Marii Skłodowskiej-Curie” competition organized by Ministry of Science and Higher Education and Elle magazine, 2012
- PRELUDIUM grant, National Science Centre, 2014-2017
Publications:
1. Marta Dudek, Joanna Trylska. Molecular dynamics simulations of L-RNA involving homo- and heterochiral complexes. J. Chem. Theory Comput., 2017;13(3):1244–1253. doi: 10.1021/acs.jctc.6b01075
2. Marta Dudek, Julia Romanowska, Tomasz Wituła, Joanna Trylska. Interactions of amikacin with the RNA model of the ribosomal A-site: computational, spectroscopic and calorimetric studies, Biochimie 2014;102:188-202.
3. Monika Wojciechowska, Marta Dudek, Joanna Trylska. Thermodynamics of the pseudo-knot in helix 18 of 16S ribosomal RNA. Biopolymers 2018;109(4):e23116. doi: 10.1002/bip.23116.
4. Stanisław Niemczyk, Marta Dudek, Zbigniew Bartoszewicz, Katarzyna Szamotulska, Łukasz Woźniacki, Dorota Brodowska-Kania, Longin Niemczyk, Władysław Małek, Joanna Matuszkiewicz-Rowińska. Determining the enzymatic activities of iodothyronine 5′-deiodinases in renal medulla and cortex. Polish Journal of Endocrinology 2013; 64(3):182-5
Additional training, workshops:
- 2019, Paris, France
Title: TAT 2019 – International Congress on Targeted Anticancer Therapies
- 2018, Warsaw, Poland
Title: Supercomputing Frontiers Europe 2018. KDM Users Session (presentation and poster)
- 2017, Uniejów, Poland
Title: Xth Symposium of the Polish Bioinformatics Society (poster)
- 2017, Warsaw, Poland
Title: XXVIIth Congress of the Polish Society of Hematology and Transfusion Medicine (poster)
- 2017, Lipari, Italy
Title: Lipari School on Computational Life Sciences (poster)
- 2015, Lausanne, Switzerland
Title: Computational advances in drug discovery (poster)
- 2015, Chicago, USA
Title: ASCO Annual Meeting
- 2014, St. Simons Island, USA
Title: 14th Sanibel Symposium (presentation and poster)
- 2013, Platja d´Aro, Spain
Title: CECAM/Psi-k Research Conference: Multi-scale Modeling from First-Principles (poster)
- 2013, Brodnica, Poland
Title: IV Wielodyscyplinarne Spotkania Wakacyjne KFnrD “Rzeczpospolita mniej znana” (invited lecture)
- 2013, Pułtusk, Poland
Title: Ogólnopolskie Sympozjum Interdyscyplinarne Inter-Mix 2013 (poster)
- 2012, Gdańsk, Poland
Title: “10th Workshop on Bioinformatics and 5th Symposium of the Polish Bioinformatics Society” (oral presentation)
- 2012, Paris, France
Title: “49th ERA-EDTA Congress” (poster)
- 2011, Warsaw, Poland
Title: “Multi-Pole Approach to Structural Biology” (poster)
- 2011, Warsaw, Poland
Title: “The Modern Techniques for Drug Design Purposes” (poster)
- 2011, Bedlewo, Poland
Title: “Biomolecules and Nanostructures” (poster)
- 2011, Zurich, Switzerland
Title: “Dynamics of Protein-Nucleic Acid Interactions: Integrating Simulations with Experiments” (poster)
- 2011, Warsaw, Poland
Title: “7th Warsaw International Medical Congress for Young Scientists” (poster presentation)
- 2009, San Sebastian, Spain
Title: “Summer School on Simulation Approaches to Problems in Molecular and
Cellular Biology” (poster contribution)
- 2009, Cancer Center Institute, Warsaw
Title: “What do you know about cancer?” – conference on oncology
- 2007, The University of Warsaw, Faculty of Biology, Division of Parasitology
Project: “Mechanism of apoptosis in Heligmosomoides polygyrus infection”
Supervisor: prof. Maria Doligalska
- 2006, Division of Low Temperature Physics, Institute of Molecular Physics,
Polish Academy of Sciences, Odolanów
Title: “Summer with helium” – conference on advances in superconductivity
- 2005, Molecular Biology Department, Cancer Center Institute, Warsaw
Project: “Investigating the interactions between regulatory proteins and non-coding
transcripts’ fragments”
Supervisor: prof. Janusz Siedlecki
- 2005, Molecular Biology Department, Cancer Center Institute, Warsaw
Project: “Mutations in squamous cell carcinoma”
Supervisor: dr Ryszard Konopiński
- 2005, Institute of Physics, Polish Academy of Sciences, Warsaw
Project: “Computational modelling of calmodulin and titin”
Supervisor: prof. Marek Cieplak
- 2005, Institute of Organic Chemistry, Polish Academy of Sciences, Warsaw
Project: “Synthesis of dichlorosacharose”
Supervisor: prof. Sławomir Jarosz
- 2005, Cademuir, Scotland
Title: “Cademuir Summer School”
Memberships:
American Society of Clinical Oncology – Junior Member
European Society for Medical Oncology – Member
World Doctors Orchestra – Cello
Activity in students’ organizations:
Chairman of Students’ Nephrological Scientific Circle – Military Institute of Medicine, Warsaw (2010-2012)
Chairman of Chamber Orchestra – Medical University, Warsaw (2007 – 2014)
2012, Rijeka, Croatia – participant of European Medical Students’ Orchestra (cello)
Non-scientific skills:
Co-founder of Temptonik: the most advanced website for amateur and professional singers.
Engineer in K-Balans company.
Music: playing cello and church organs; establishing the first academic orchestra in Poland at the Medical University of Warsaw