MINT can analyze structure of your RNA molecule meaning:
– find secondary and tertiary contacts and give its conformations
– compute energy for stacking interactions
– find pi-stacking pairs
– detect and classify RNA structural motifs
– outline WCWC triplexes
MINT is also able to analyze the trajectory – compute average stacking, secondary structure and cluster the motifs.
For a single PDB analysis, complete documentation and exemplary output, please see the
If you find MINT useful, please acknowledge its use by citing:
Anna Górska, Maciej Jasiński, Joanna Trylska, MINT: software to identify motifs and short-range interactions in trajectories of nucleic acids, Nucl. Acids Res., 2015, DOI: 10.1093/nar/gkv559.