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7 Nov 2013 Version 2.3: RNA one-bead model added, additional nonbonded potentials (double well, piecewise Morse-barrier, tabularized potential), changes to manual & examples

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2 Jul 2013     bugfix: restart file writing

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3 Nov 2010      cosmetic changes

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19 May 2010     bugfix: DNA_NLMORSE potential

bugfix: RedMD_prevModel

add BOND_HARM tag

add spell check for ‘inp’ file

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12 May 2010     bugfix: BetaA40 model

force field generators are now replaced with a single, general module

support for MPI was added

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16 Apr 2010      version 2.1 – a bugfix revision – is now available

the source code has also been tuned for performance

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12 Feb 2010      cosmetic changes

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15 Nov 2009     fixed bug in the RedGNM module

09 Nov 2009     version 2.0 is now available:

-L-BFGS

-Monte Carlo conformational search

– tool for trajectory analysis

– Beta_A40 force field – force field based on two-bead mapping,

applicable to small proteins

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31 Aug 2009     version 1.3 is now available:

– DNA force field

– containing sphere external field

– Modified Gaussian Network Model for Normal Mode Analysis (RedGNM)

– updated manual

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20 Feb 2008     version 1.2 is now available:

– implementation of electrostatic interactions (Coulombic terms with a distance-dependent dielectric constant)

– fixed bug – nonlocal morse potentials settings

– fixed bug – writing of atoms’ serial numbers to output PDB files

– fixed bug – reading of PDB files without the last two columns is now possible

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02 Nov 2008:     version 1.1 is now available:

– only the source code is distributed

– REACH model added

– Normal Mode Analysis (NMA) module added

– updated manual

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23 Sep 2008:   – updated examples (Nucleosome Model)

– updated manual

– the nucleosome model is now fully functional

and secondary structure-dependent potential terms

are now included correctly (there was a bug in the previous release);

affected source files:

potential/utils_mol.cpp

fieldutils/makegenericmodel.h

fieldutils/RedMD_extractPDB.cpp

fieldutils/RedMD_genModel_Nucl.cpp